• 논문 PubMed
• http://trimal.cgenomics.org/
• http://trimal.cgenomics.org/getting_started_with_trimal_v1.2

[BioStars] Removing gapped columns from a multiple sequence alignment

trimal -in test -out test_nogaps_trimal -nogaps

Uses a heuristic method to decide which is the best automated method to trim the input alignment.

 trimal -in <inputfile> -out <outputfile> -automated1

FASconCAT PubMed https://www.zfmk.de/en/research/research-centres-and-groups/fasconcat

논문 GitHub