bioinfo:list_of_public_genomes_for_comparison
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Public genomes for comparison
향후 변동될 수 있으며 다음에 보인 KRIBB 등록 균주 중 일부(별표)는 표준 균주가 아니다(KRIBB에서 이미 등록한 genome을 포함하였음; 그러나 본 프로젝트와 관련이 없을 수도 있음). KRIBB 등록 균주가 아닌 것은 전부 표준 균주이다. 각 row는 <assembley accession> <name> <strain name>의 컬럼으로 이루어져 있다. Name은 예전에는 species + strain까지 다 포함하여 등록을 하는 경향이 있었지만 요즘은 species name으로 줄여서 등록하고 균주명은 별도로 등록하는 경향이 있다.
최종 정리일: — Haeyoung Jeong 2025/01/17 16:51
- GCA_000773685.1 Acinetobacter sp. HR7*
- GCA_000773675.1 Bordetella trematum HR18*
- GCA_001650325.1 Exiguobacterium undae KCTC 3810
- GCA_001895205.1 Vibrio injensis M12-1144
- GCA_004916975.1 Paenibacillus dokdonensis YH-JAE5
- GCA_001742425.1 Bacillus solimangrovi GH2-4
GCA_000773685.1 Acinetobacter sp. HR7 HR7* GCA_001552675.1 Alicyclobacillus sendaiensis NBRC 100866 NBRC 100866 GCA_000829535.1 Bacillus badius MTCC 1458 GCA_001591605.1 Bacillus badius NBRC 15713 NBRC 15713 GCA_001742425.1 Bacillus solimangrovi GH2-4 GCA_900078335.1 Bordetella trematum NCTC12995 GCA_900445945.1 Bordetella trematum NCTC12995 GCA_000773675.1 Bordetella trematum HR18* GCA_003710915.1 Brevibacillus invocatus JCM 12215 GCA_000525915.1 Brochothrix campestris FSL F6-1037 FSL F6-1037 GCA_900445365.1 Cytobacillus firmus NCTC10335 GCA_001591465.1 Cytobacillus firmus NBRC 15306 NBRC 15306 GCA_002835735.1 Cytobacillus horneckiae 1P01SC GCA_042649545.1 Cytobacillus kochii CCUG 59877 GCA_030812975.1 Cytobacillus kochii DSM 23667 GCA_001650325.1 Exiguobacterium undae KCTC 3810 GCA_000620805.1 Exiguobacterium undae DSM 14481 DSM 14481 GCA_017872935.1 Formosa algae DSM 15523 GCA_001439665.1 Formosa algae KMM 3553 GCA_001678675.1 Gelidibacter algens ACAM 536 GCA_003259265.1 Gelidibacter algens DSM 12408 GCA_000025345.1 Geodermatophilus obscurus DSM 43160 DSM 43160 GCA_039544795.1 Geodermatophilus obscurus DSM 43160 NBRC 13315 GCA_020731255.1 Gordonia bronchialis FDAARGOS_1594 GCA_900450805.1 Gordonia bronchialis NCTC10667 GCA_000024785.1 Gordonia bronchialis DSM 43247 DSM 43247 GCA_001420715.1 Heyndrickxia shackletonii LMG 18435 GCA_011008805.1 Heyndrickxia shackletonii LMG 18435 GCA_040801915.1 Jeotgalibacillus marinus DSM 1297 GCA_900478165.1 Lederbergia lenta NCTC4824 GCA_001591545.1 Lederbergia lenta NBRC 16444 NBRC 16444 GCA_000708755.2 Metabacillus indicus LMG 22858 LMG 22858 GCA_001591585.1 Niallia circulans NBRC 13626 NBRC 13626 GCA_021532375.1 Paenibacillus alkaliterrae DSM 17040 GCA_004001025.1 Paenibacillus amylolyticus NBRC 15957 GCA_004117095.1 Paenibacillus chitinolyticus KCCM 41400 GCA_026797105.1 Paenibacillus chitinolyticus NRRL B-23119 GCA_000739915.1 Paenibacillus chitinolyticus NBRC 15660 NBRC 15660 GCA_004916975.1 Paenibacillus dokdonensis YH-JAE5 GCA_001632305.1 Paenibacillus glucanolyticus 5162 GCA_004000885.1 Paenibacillus glucanolyticus NBRC 15330 NBRC 15330 GCA_004000805.1 Paenibacillus glycanilyticus NBRC 16618 NBRC 16618 GCA_015473105.1 Paenibacillus glycanilyticus subsp. hiroshimensis CCI5 GCA_004000825.1 Paenibacillus kobensis NBRC 15729 NBRC 15729 GCA_001514495.1 Paenibacillus pabuli NBRC 13638 NBRC 13638 GCA_014192015.1 Paenibacillus rhizosphaerae CECT 5831 GCA_000758685.1 Paenibacillus stellifer DSM 14472 GCA_002161855.1 Paenibacillus thiaminolyticus NRRL B-4156 GCA_007066085.1 Paenibacillus thiaminolyticus NRRL B-4156 GCA_004001005.1 Paenibacillus thiaminolyticus NBRC 15656 = DSM 7262 NBRC 15656 GCA_017873435.1 Paenibacillus turicensis DSM 14349 GCA_004000985.1 Paenibacillus validus NBRC 15382 NBRC 15382 GCA_001687625.2 Planococcus maritimus DSM 17275 GCA_001591565.1 Priestia flexa NBRC 15715 NBRC 15715 GCA_001274935.1 Priestia koreensis DSM 16467 GCA_900002825.1 Romboutsia lituseburensis A25K GCA_900103615.1 Romboutsia lituseburensis DSM 797 DSM 797 GCA_039525765.1 Rothia amarae JCM 11375 GCA_000307855.1 Schinkia azotoformans LMG 9581 LMG 9581 GCA_017775145.1 Staphylococcus chromogenes ATCC 43764 GCA_014635745.1 Staphylococcus chromogenes CCM 3387 GCA_029024625.1 Staphylococcus chromogenes DSM 20454 GCA_900458195.1 Staphylococcus chromogenes NCTC10530 GCA_002901945.1 Staphylococcus chromogenes NCTC 10530 GCA_000875895.1 Staphylococcus gallinarum DSM 20610 GCA_900458615.1 Staphylococcus gallinarum NCTC12195 GCA_003968815.1 Staphylococcus gallinarum NCTC 12195 GCA_003019255.1 Staphylococcus kloosii ATCC 43959 GCA_900458805.1 Staphylococcus kloosii NCTC12415 GCA_002902055.1 Staphylococcus kloosii NCTC 12415 GCA_900167015.1 Succinivibrio dextrinosolvens DSM 3072 DSM 3072 GCA_001270965.1 Sunxiuqinia dokdonensis DH1 GCA_900113005.1 Sunxiuqinia elliptica CGMCC 1.9156 GCA_001591425.1 Sutcliffiella cohnii NBRC 15565 NBRC 15565 GCA_002019665.1 Sutcliffiella halmapala DSM 8723 GCA_001895205.1 Vibrio injensis M12-1144 GCA_001189575.1 Virgibacillus pantothenticus DSM 26 GCA_018075365.1 Virgibacillus pantothenticus DSM 26 GCA_900156795.1 Virgibacillus pantothenticus DSM 26 GCA_003148645.1 Xanthomarina spongicola DSM 22637
이 내용은 strains_for_comp_analysis.txt 파일을 원본으로 한다.
bioinfo/list_of_public_genomes_for_comparison.1737101547.txt.gz · Last modified: 2025/01/17 17:12 by hyjeong