scripts_requiring_all.fna.tar.gz
Scripts requiring old all.fna.tar.gz
$ grep -r "genomes/Bacteria" * Test/test_ima.ini:asmcontigs: ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Candidatus_Carsonella_ruddii_uid58773/NC_008512.fna grep: Utilities/DB/kraken/taxonomy/readme.txt: 허가 거부 Utilities/cpp/Linux-x86_64/kraken/scripts/download_genomic_library.sh: wget $FTP_SERVER/genomes/Bacteria/all.fna.tar.gz Utilities/cpp/Linux-x86_64/kraken/bin/download_genomic_library.sh: wget $FTP_SERVER/genomes/Bacteria/all.fna.tar.gz Utilities/cpp/Linux-x86_64/Ray/scripts/NCBI-Taxonomy/CreateRayInputStructures.sh: wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/all.fna.tar.gz Utilities/cpp/Linux-x86_64/Ray/REFIX/NCBI-Taxonomy/CreateRayInputStructures.sh: wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/all.fna.tar.gz Utilities/cpp/Linux-x86_64/ALE/doc/install.rst: $ wget ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Bacteria/Escherichia_coli_K_12_substr__DH10B_uid20079/CP000948.fna Utilities/cpp/Linux-x86_64/ALE/src/image_maker.py: wget_command = "wget --user anonymous ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Bacteria/Escherichia_coli_K_12_substr__DH10B_uid20079/CP000948.fna" Utilities/cpp/Linux-x86_64/prokka/lib/Phylosift/UpdateDB.pm: my $ncbi_wget_cmd = "wget -m --continue --timeout=20 --accept=gbk ftp://ftp.ncbi.nih.gov/genomes/Bacteria"; Utilities/cpp/Linux-x86_64/prokka/lib/Phylosift/UpdateDB.pm: my $FINDER = ps_open("find ftp.ncbi.nih.gov/genomes/Bacteria -type d |"); Utilities/cpp/Linux-x86_64/prokka/lib/Phylosift/UpdateDB.pm: my $ncbi_wget_cmd = "wget -m --continue --timeout=20 --accept=gbk ftp://ftp.ncbi.nih.gov/genomes/Bacteria_DRAFT"; Utilities/cpp/Linux-x86_64/prokka/lib/Phylosift/UpdateDB.pm: $ncbi_wget_cmd = "wget -m --continue --timeout=20 --accept=\"*fna.tgz\",\"*fna.[0-9].tgz\" ftp://ftp.ncbi.nih.gov/genomes/Bacteria_DRAFT"; Utilities/python/NB_install.py: genomeDir = '/genomes/Bacteria' docs/content/workflows.rst: asmcontigs: /Users/skoren/Personal/Research/metAMOS/Test/test.asm,ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Candidatus_Carsonella_ruddii_uid58773/NC_008512.fna phylosift/lib/Phylosift/UpdateDB.pm: my $ncbi_wget_cmd = "wget -m --continue --timeout=20 --accept=gbk ftp://ftp.ncbi.nih.gov/genomes/Bacteria"; phylosift/lib/Phylosift/UpdateDB.pm: my $FINDER = ps_open("find ftp.ncbi.nih.gov/genomes/Bacteria -type d |"); phylosift/lib/Phylosift/UpdateDB.pm: my $ncbi_wget_cmd = "wget -m --continue --timeout=20 --accept=gbk ftp://ftp.ncbi.nih.gov/genomes/Bacteria_DRAFT"; phylosift/lib/Phylosift/UpdateDB.pm: $ncbi_wget_cmd = "wget -m --continue --timeout=20 --accept=\"*fna.tgz\",\"*fna.[0-9].tgz\" ftp://ftp.ncbi.nih.gov/genomes/Bacteria_DRAFT"; phymm/.logs/setup/01_download_refseq_tarball__err.txt:Can't change remote directory: /genomes/Bacteria: No such file or directory phymm/phymmblSetup.pl: my $targetDir = '/genomes/Bacteria';
scripts_requiring_all.fna.tar.gz.txt · Last modified: 2021/03/17 13:09 by 127.0.0.1