Differences

This shows you the differences between two versions of the page.

--- scaffolding [2016/02/16 14:25] – [SSPACE를 이용한 scaffolding] hyjeong
+++ scaffolding [2021/03/17 13:09] (current) – external edit 127.0.0.1
@@ Line 14: / Line 14: @@
   $ SolexaQA++ dynamictrim SB_iontor.fastq –-torrent (default: P = 0.05)
   $ sed -n '/^@BYI6V.*\/1$/{N;N;N;p;}' SB_iontor.fastq.trimmed > SB-trimmed_1.fastq
-  $ sed -n '/^@BYI6V.*\/1$/{N;N;N;p;}' SB_iontor.fastq.trimmed > SB-trimmed_1.fastq
+  $ sed -n '/^@BYI6V.*\/2$/{N;N;N;p;}' SB_iontor.fastq.trimmed > SB-trimmed_2.fastq
   [optional] SolexaQA++ lengthsort SB-trimmed_1.fastq SB-trimmed_2.fastq -l 40
@@ Line 43: / Line 43: @@
   $cat library2.txt
   PGM_mate-pair-library 1rc.fastq SB-trimmed_2.fastq 3000 0.5 0
+==== SSPACE v3.0의 library file 사례====
+  Lib1 bwa file1.1.fasta file1.2.fasta 400 0.25 FR
+  Lib1 bowtie file2.1.fasta file2.2.fasta 400 0.25 FR
+  Lib2 bwasw file3.1.fastq file3.2.fastq 4000 0.5 RF
+  Lib2 TAB file4.tab 4000 0.5 RF
+  Lib3 TAB file5.tab 10000 0.5 RF
+  unpaired bowtie unpaired_reads1.fasta
+  unpaired bwasw unpaired_longreads1.gz