Genome Informatics Laboratory at KRIBB

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====== Pseudomonas amygdali strains ======
  * Title: Toward complete bacterial genome sequencing through the combined use of multiple next-generation sequencing platforms
  * J. Microbiol. Biotechnol. 2015 Oct 14 (published online) [[http://www.ncbi.nlm.nih.gov/pubmed/2646377|PubMed]] [[http://www.jmb.or.kr/submission/Journal/025/JMB025-07-NS_FDOC_1.pdf|Full text link]]

===== Latest assembly results obtained through this study =====
CLC Genomics Workbench was used instead of A5-miseq.
  * //Pseudomonas amygdali// pv. tabaci ATCC 11528 {{:573066.10.zip|zipped GenBank file}}
  * //Pseudomonas amygdali// pv. lachrymans 98A-744 {{:53707.4.zip|zipped GenBank file}}

===== First assembly versions (still available from NCBI) =====
  * Reference: Genome Announc. 2015 May-Jun; 3(3): e00683-15. [[http://www.ncbi.nlm.nih.gov/pubmed/26089433|PubMed]] [[http://www.ncbi.nlm.nih.gov/pubmed/26089433|Full text link]]
  * Pseudomonas amygdali pv. tabaci ATCC 11528 [[http://www.ncbi.nlm.nih.gov/nuccore/LCWS01000000|LCWS01000000]]
    * A5-miseq (Illumina)
  * Pseudomonas amygdali pv. lachrymans 98A-744 [[http://www.ncbi.nlm.nih.gov/nuccore/LCWT01000000|LCWT01000000]]
    * A5-miseq (Illumina) + SSPACE scaffolding (Ion Torrent PGM)