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metagenomics [2022/01/20 13:13] – [Shotgun metagenomic analysis 2022] hyjeongmetagenomics [2022/07/07 10:30] (current) – ↷ Links adapted because of a move operation 207.46.13.204
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   * [[http://www.metagenomics.wiki/|Metagenomics wiki]]   * [[http://www.metagenomics.wiki/|Metagenomics wiki]]
   * [[http://blog.mothur.org/2016/01/12/mothur-and-qiime/|mothur and QIIME]] Despite their differences in philosophy, //most// of the differences in mothur and QIIME are cosmetic.   * [[http://blog.mothur.org/2016/01/12/mothur-and-qiime/|mothur and QIIME]] Despite their differences in philosophy, //most// of the differences in mothur and QIIME are cosmetic.
 +  * [[https://youtu.be/ED8VkMLYTTI|Aligning 16S sequences to reference set and filtering the alignment]] This tutorial explains how to align 16S sequences to the Silva reference set and how to filter the alignment and remove identical sequences.
  
 ===== 16S rRNA-based ===== ===== 16S rRNA-based =====
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 Shotgun metagenomic analysis라고 하여 반드시 MAG(metagenome-assembled genome)을 중간물로 사용하는 것은 아니다. 예를 들어 마커 유전자 DB를 이용한 정밀한 phylogenetic analysis라면, read를 꼭 조립해야 하는 것은 아니기 때문이다. Shotgun metagenomic analysis라고 하여 반드시 MAG(metagenome-assembled genome)을 중간물로 사용하는 것은 아니다. 예를 들어 마커 유전자 DB를 이용한 정밀한 phylogenetic analysis라면, read를 꼭 조립해야 하는 것은 아니기 때문이다.
  
-[[MBA - metaWRAP, bioBakery & Anvi'o]]+[[metagenomic_data_assembly_pipeline]]
  
  
metagenomics.1642652008.txt.gz · Last modified: by hyjeong