custom_scripts_for_16s_rrna_sequence_analysis
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| Next revision | Previous revision | ||
| custom_scripts_for_16s_rrna_sequence_analysis [2019/09/09 21:51] – created hyjeong | custom_scripts_for_16s_rrna_sequence_analysis [2021/03/17 13:09] (current) – external edit 127.0.0.1 | ||
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| Line 7: | Line 7: | ||
| # https:// | # https:// | ||
| # | # | ||
| + | | ||
| out=merged_dir | out=merged_dir | ||
| + | | ||
| if [ ! -d merged_reads ]; then | if [ ! -d merged_reads ]; then | ||
| echo Creating ${out} directory... | echo Creating ${out} directory... | ||
| mkdir ${out} | mkdir ${out} | ||
| fi | fi | ||
| + | | ||
| for f in *F_sub.* | for f in *F_sub.* | ||
| do | do | ||
| + | | ||
| if [ ! -e ${f} ]; then | if [ ! -e ${f} ]; then | ||
| echo Can\'t find ' | echo Can\'t find ' | ||
| Line 23: | Line 23: | ||
| exit | exit | ||
| fi | fi | ||
| + | | ||
| r=$(sed -e " | r=$(sed -e " | ||
| file=$(cut -d_ -f1 <<< | file=$(cut -d_ -f1 <<< | ||
custom_scripts_for_16s_rrna_sequence_analysis.1568033481.txt.gz · Last modified: (external edit)