bracken_for_species_abundance_esimation
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| bracken_for_species_abundance_esimation [2017/05/26 13:46] – [Step 1. Kraken classification of DNA reads] hyjeong | bracken_for_species_abundance_esimation [2021/03/17 13:09] (current) – external edit 127.0.0.1 | ||
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| ==== Step 1. Kraken classification of DNA reads ==== | ==== Step 1. Kraken classification of DNA reads ==== | ||
| Kraken에 대한 상세한 설명 자료는 [[https:// | Kraken에 대한 상세한 설명 자료는 [[https:// | ||
| - | $ KRAKEB_DB=/ | + | $ KRAKEN_DB=/ |
| $ kraken --db $KRAKEN_DB --threads=16 READS.fastq > READS.fastq.kraken | $ kraken --db $KRAKEN_DB --threads=16 READS.fastq > READS.fastq.kraken | ||
| $ kraken-report --db $KRAKEN_DB READS.fastq.kraken > READS.fastq.kraken.report | $ kraken-report --db $KRAKEN_DB READS.fastq.kraken > READS.fastq.kraken.report | ||
bracken_for_species_abundance_esimation.1495773980.txt.gz · Last modified: (external edit)